Transcript: FAM160A1-DT:16

Basic information

LNCipedia transcript ID: FAM160A1-DT:16 
LNCipedia gene ID: FAM160A1-DT
Location (hg19): chr4:152318684-152330179
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 2754 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000270265.1|MICT00000272855.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 6.7177 non-coding 
CPAT coding probability 3.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FAM160A1-DT:16 no no no no

Available literature

  1. Zeng (2017), Comprehensive investigation of a novel differentially expressed lncRNA expression profile signature to assess the survival of patients with colorectal adenocarcinoma., Oncotarget
  2. Yang (2015), Genome-wide analysis of long noncoding RNA profile in human gastric epithelial cell response to Helicobacter pylori., Jpn. J. Infect. Dis.
  3. Zhu (2015), Microarray analysis of Long non-coding RNA expression profiles in human gastric cells and tissues with Helicobacter pylori Infection., BMC Med Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SH3D19-1:6
5.0 lnc-SH3D19-1:6
5.1 FAM160A1-DT:2
5.2 FAM160A1-DT:16