Transcript: FAM222A-AS1:5

Basic information

LNCipedia transcript ID: FAM222A-AS1:5 
HGNC Gene Symbol: FAM222A-AS1    
HGNC Full Gene Name: FAM222A antisense RNA 1
Ensembl Gene ID: ENSG00000255650
Ensembl Transcript ID: ENST00000541460
Location (hg19): chr12:110172128-110211289
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 751 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000541460; ENST00000541460.1; FAM222A-AS1-002; OTTHUMT00000403180.1
Alternative gene names: ENSG00000255650; AC007834.3; ENSG00000255650.1; FAM222A-AS1; OTTHUMG00000169261.1; ENSG00000255650.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -116.019 non-coding 
CPAT coding probability 35.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FAM222A-AS1:5 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TRPV4-1:2
3.1 lnc-TRPV4-1:2
4.0 FAM222A-AS1:5
4.1 FAM222A-AS1:5
5.0 FAM222A-AS1:5
5.1 FAM222A-AS1:5
5.2 FAM222A-AS1:5