Transcript: FAM226B:6

Basic information

LNCipedia transcript ID: FAM226B:6 
LNCipedia gene ID: FAM226B
Ensembl Gene ID: ENSG00000269911
Ensembl Transcript ID: ENST00000602508
Location (hg19): chrX:71997432-71998921
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1490 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000602508.1
Alternative gene names: ENSG00000269911.1; FAM226B; RP1-172N19.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.1609 non-coding 
CPAT coding probability 80.51% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
FAM226B:6 yes no no no

Available literature

  1. Chen (2006), Identification of a new cancer/testis gene family, CT47, among expressed multicopy genes on the human X chromosome., Genes Chromosomes Cancer


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AL353999.2.1-2:1
4.0 lnc-AL353999.2.1-2:1
4.1 lnc-AL353999.2.1-2:1
5.0 lnc-AL353999.2.1-2:1
5.1 FAM226B:4
5.2 FAM226B:6