Transcript: FAM230B:5

Basic information

LNCipedia transcript ID: FAM230B:5 
HGNC Gene Symbol: FAM230B    
HGNC Full Gene Name: family with sequence similarity 230 member B
Ensembl Gene ID: ENSG00000215498
Ensembl Transcript ID: ENST00000415704
Location (hg19): chr22:21522142-21527819
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 396 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000415704.1; KB-1183D5.11-007; OTTHUMT00000320068.1; NONHSAT083640; ENST00000415704.5
Alternative gene names: ENSG00000215498.4; KB-1183D5.11; OTTHUMG00000150782.3; FAM230B; ENSG00000215498.8; FLJ46366; ENSG00000215498.9


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.3564 non-coding 
CPAT coding probability 9.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FAM230B:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AP000552.1-2:3
4.0 FAM230B:5
4.1 FAM230B:5
5.0 FAM230B:5
5.1 FAM230B:5
5.2 FAM230B:5