Transcript: FAM242D:5

Basic information

LNCipedia transcript ID: FAM242D:5 
HGNC Gene Symbol: FAM242D    
HGNC Full Gene Name: family with sequence similarity 242 member D
Ensembl Gene ID: ENSG00000231248
Ensembl Transcript ID: ENST00000419207
Location (hg19): chr9:44823714-44835521
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 718 bp
Exons: 4
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000419207.2
Alternative gene names: ENSG00000231248.2; RP11-160N1.9; AL935212.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -103.4918 non-coding 
CPAT coding probability 0.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FAM242D:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-160N1.10.1-1:2
4.0 lnc-RP11-160N1.10.1-1:2
4.1 lnc-RP11-160N1.10.1-1:2
5.0 lnc-RP11-160N1.10.1-1:2
5.1 FAM242D:3
5.2 FAM242D:5