Transcript: FAM27C:1

Basic information

LNCipedia transcript ID: FAM27C:1 
LNCipedia gene ID: FAM27C
RefSeq ID: NR_027421
Location (hg19): chr9:44990236-44991492
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 703 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_027421; NR_027421.1
Alternative gene names: bA374M1.5; FAM27A3; bA7G23.5; FAM27A1; FAM27C


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 33.0586 non-coding 
CPAT coding probability 20.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FAM27C:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM27C-4:1
4.0 FAM27C:1
4.1 FAM27C:1
5.0 FAM27C:1
5.1 FAM27C:1
5.2 FAM27C:1