Transcript: FAM27C:2

Basic information

LNCipedia transcript ID: FAM27C:2 
HGNC Gene Symbol: FAM27C    
HGNC Full Gene Name: family with sequence similarity 27 member C
Ensembl Gene ID: ENSG00000154537
Ensembl Transcript ID: ENST00000377542
Location (hg19): chr9:44990314-44991483
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 616 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000377542.3
Alternative gene names: ENSG00000154537.4; FAM27C; bA374M1.5; FAM27A3; bA7G23.5; FAM27A1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 24.0661 non-coding 
CPAT coding probability 19.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FAM27C:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 FAM27C:2
4.1 FAM27C:2
5.0 FAM27C:2
5.1 FAM27C:2
5.2 FAM27C:2