Transcript: FAM41C:1

Basic information

LNCipedia transcript ID: FAM41C:1 
HGNC Gene Symbol: FAM41C    
HGNC Full Gene Name: family with sequence similarity 41 member C
Ensembl Gene ID: ENSG00000230368
Ensembl Transcript ID: ENST00000446136
Location (hg19): chr1:803451-812283
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1807 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000446136; ENST00000446136.1; FAM41C-001; OTTHUMT00000007021.1; NONHSAT000192
Alternative gene names: ENSG00000230368; FAM41C; ENSG00000230368.2; OTTHUMG00000002469.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 63.1889 coding 
CPAT coding probability 12.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
FAM41C:1 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NOC2L-3:1
3.1 lnc-NOC2L-3:1
4.0 FAM41C:1
4.1 FAM41C:1
5.0 FAM41C:1
5.1 FAM41C:1
5.2 FAM41C:1