Transcript: FAM87A:11

Basic information

LNCipedia transcript ID: FAM87A:11 
LNCipedia gene ID: FAM87A
Location (hg19): chr8:329088-330164
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 628 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT124587
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -41.8688 non-coding 
CPAT coding probability 4.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FAM87A:11 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-63E5.6.1-1:4
4.0 lnc-RP11-63E5.6.1-1:4
4.1 lnc-RP11-63E5.6.1-1:4
5.0 lnc-RP11-63E5.6.1-1:4
5.1 FAM87A:5
5.2 FAM87A:11