Transcript: FAM87A:8

Basic information

LNCipedia transcript ID: FAM87A:8 
LNCipedia gene ID: FAM87A
Location (hg19): chr8:329590-333174
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 872 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000523195.2; RP11-63E5.8-001; OTTHUMT00000384563.1; NONHSAT147614
Alternative gene names: ENSG00000255412.1; RP11-63E5.8; OTTHUMG00000165513.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -124.9786 non-coding 
CPAT coding probability 43.98% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
FAM87A:8 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-63E5.6.1-1:1
4.0 lnc-RP11-63E5.6.1-1:1
4.1 lnc-RP11-63E5.6.1-1:1
5.0 lnc-RP11-63E5.6.1-1:1
5.1 FAM87A:2
5.2 FAM87A:8