Transcript: FAM87B:5

Basic information

LNCipedia transcript ID: FAM87B:5 
LNCipedia gene ID: FAM87B
RefSeq ID: NR_103536
Location (hg19): chr1:752751-755214
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1944 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00000129; ENST00000326734; ENST00000326734.1; FAM87B-001; OTTHUMT00000007025.1; NONHSAT000148; NR_103536; NR_103536.1
Alternative gene names: XLOC_000007; linc-SAMD11-5; ENSG00000177757; FAM87B; ENSG00000177757.1; OTTHUMG00000002471.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 40.5747 non-coding 
CPAT coding probability 37.42% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
FAM87B:5 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AL669831.1-4:1
3.1 lnc-AL669831.1-3:1
4.0 lnc-AL669831.1-3:1
4.1 lnc-AL669831.1-3:1
5.0 lnc-AL669831.1-3:1
5.1 FAM87B:2
5.2 FAM87B:5