Transcript: FANK1-AS1:2

Basic information

LNCipedia transcript ID: FANK1-AS1:2 
HGNC Gene Symbol: FANK1-AS1    
HGNC Full Gene Name: FANK1 antisense RNA 1
Ensembl Gene ID: ENSG00000233409
Ensembl Transcript ID: ENST00000445458
Location (hg19): chr10:127660757-127661695
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 428 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000445458.1; FANK1-AS1-001; OTTHUMT00000050948.1; NONHSAT016926
Alternative gene names: ENSG00000233409.1; FANK1-AS1; OTTHUMG00000019239.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -36.2814 non-coding 
CPAT coding probability 5.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FANK1-AS1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ADAM12-1:1
4.0 FANK1-AS1:2
4.1 FANK1-AS1:2
5.0 FANK1-AS1:2
5.1 FANK1-AS1:2
5.2 FANK1-AS1:2