Transcript: FAS-AS1:6

Basic information

LNCipedia transcript ID: FAS-AS1:6 
HGNC Gene Symbol: FAS-AS1    
HGNC Full Gene Name: FAS antisense RNA 1
RefSeq ID: NR_028371
Location (hg19): chr10:90751179-90752732
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1554 bp
Exons: 1
Sources: NONCODE v4; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT015489; NR_028371.1
Alternative gene names: FAS-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -76.2485 non-coding 
CPAT coding probability 2.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FAS-AS1:6 no no no no

Available literature

  1. Villamizar (2016), Data in support of transcriptional regulation and function of Fas-antisense long noncoding RNA during human erythropoiesis., Data Brief
  2. Kabacik (2015), Time, dose and ataxia telangiectasia mutated (ATM) status dependency of coding and noncoding RNA expression after ionizing radiation exposure., Radiat. Res.
  3. Sehgal (2014), FAS-antisense 1 lncRNA and production of soluble versus membrane Fas in B-cell lymphoma., Leukemia
  4. Yan (2005), Identification and characterization of a novel gene Saf transcribed from the opposite strand of Fas., Hum. Mol. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ACTA2-1:3
4.0 lnc-ACTA2-1:3
4.1 lnc-ACTA2-1:3
5.0 lnc-ACTA2-1:3
5.1 FAS-AS1:3
5.2 FAS-AS1:6