Transcript: FBXO3-DT:23

Basic information

LNCipedia transcript ID: FBXO3-DT:23 
HGNC Gene Symbol: FBXO3-DT    
HGNC Full Gene Name: FBXO3 divergent transcript
Ensembl Gene ID: ENSG00000254508
Ensembl Transcript ID: ENST00000533046
RefSeq ID: NR_120550
Location (hg19): chr11:33796245-33797216
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 386 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000533046.1; RP11-646J21.5-001; OTTHUMT00000388826.1; NONHSAT018718; NR_120550; ENST00000533046.5; NR_120550.1
Alternative gene names: ENSG00000254508.1; RP11-646J21.5; OTTHUMG00000166272.1; ENSG00000254508.5; FBXO3-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -118.4388 non-coding 
CPAT coding probability 3.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FBXO3-DT:23 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C11orf41-2:1
4.0 FBXO3-AS1:3
4.1 FBXO3-AS1:3
5.0 FBXO3-AS1:3
5.1 FBXO3-DT:11
5.2 FBXO3-DT:23