Transcript: FGD5-AS1:1

Basic information

LNCipedia transcript ID: FGD5-AS1:1 
LNCipedia gene ID: FGD5-AS1
Location (hg19): chr3:14984488-14991070
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4725 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT088374
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 25.3772 non-coding 
CPAT coding probability 34.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FGD5-AS1:1 yes no no no

Available literature

  1. Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MRPS25-1:6
4.0 FGD5-AS1:1
4.1 FGD5-AS1:1
5.0 FGD5-AS1:1
5.1 FGD5-AS1:1
5.2 FGD5-AS1:1