Transcript: FGD5-AS1:11

Basic information

LNCipedia transcript ID: FGD5-AS1:11 
HGNC Gene Symbol: FGD5-AS1    
HGNC Full Gene Name: FGD5 antisense RNA 1
Ensembl Gene ID: ENSG00000225733
Ensembl Transcript ID: ENST00000440079
Location (hg19): chr3:14986531-14989012
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1527 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000440079.1; FGD5-AS1-005; OTTHUMT00000340627.1
Alternative gene names: ENSG00000225733.1; FGD5-AS1; OTTHUMG00000155555.1; ENSG00000225733.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score 25.3772 non-coding 
CPAT coding probability 3.70% non-coding 
Bazzini small ORFs 1 coding 
seqAAMVHKAAKTTQNISNTFGPGTANKHTVQWWLKKFCKEESLEDEERDMGHGKLTTTN
orfFrame6.248686627
covF1Prop0.188679245

In stringent set: no

Locus conservation

Locus conservation?
FGD5-AS1:11 no no no no

Available literature

  1. Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MRPS25-1:5
4.0 FGD5-AS1:11
4.1 FGD5-AS1:11
5.0 FGD5-AS1:11
5.1 FGD5-AS1:11
5.2 FGD5-AS1:11