Transcript: FGD5-AS1:16

Basic information

LNCipedia transcript ID: FGD5-AS1:16 
LNCipedia gene ID: FGD5-AS1
Location (hg19): chr3:14984277-14988973
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 3765 bp
Exons: 2
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA999:2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 25.3772 non-coding 
CPAT coding probability 2.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FGD5-AS1:16 no no no no

Available literature

  1. Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 FGD5-AS1:16
4.1 FGD5-AS1:16
5.0 FGD5-AS1:16
5.1 FGD5-AS1:16
5.2 FGD5-AS1:16