Transcript: FGD5-AS1:2

Basic information

LNCipedia transcript ID: FGD5-AS1:2 
LNCipedia gene ID: FGD5-AS1
RefSeq ID: NR_046251
Location (hg19): chr3:14984286-14989948
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3805 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_046251; NR_046251.1
Alternative gene names: ; FGD5-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 25.3772 non-coding 
CPAT coding probability 2.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FGD5-AS1:2 yes no no no

Available literature

  1. Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MRPS25-1:7
4.0 FGD5-AS1:2
4.1 FGD5-AS1:2
5.0 FGD5-AS1:2
5.1 FGD5-AS1:2
5.2 FGD5-AS1:2