Transcript: FGD5-AS1:24

Basic information

LNCipedia transcript ID: FGD5-AS1:24 
LNCipedia gene ID: FGD5-AS1
Location (hg19): chr3:14983652-14989860
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4351 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000225733.1|FTMT20900000051.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 25.3772 non-coding 
CPAT coding probability 1.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FGD5-AS1:24 yes no no no

Available literature

  1. Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 FGD5-AS1:24
5.0 FGD5-AS1:24
5.1 FGD5-AS1:24
5.2 FGD5-AS1:24