Transcript: FGD5-AS1:25

Basic information

LNCipedia transcript ID: FGD5-AS1:25 
LNCipedia gene ID: FGD5-AS1
Location (hg19): chr3:14986187-14989655
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1885 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000225733.1|ENST00000417835.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 25.3772 non-coding 
CPAT coding probability 10.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FGD5-AS1:25 yes no no no

Available literature

  1. Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 FGD5-AS1:25
5.0 FGD5-AS1:25
5.1 FGD5-AS1:25
5.2 FGD5-AS1:25