Transcript: FLNC-AS1:10

Basic information

LNCipedia transcript ID: FLNC-AS1:10 
HGNC Gene Symbol: FLNC-AS1    
HGNC Full Gene Name: FLNC antisense RNA 1
Ensembl Gene ID: ENSG00000242902
Ensembl Transcript ID: ENST00000469965
Location (hg19): chr7:128490216-128502680
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 559 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000469965.1; RP11-309L24.2-001; OTTHUMT00000350802.1; NONHSAT123263
Alternative gene names: ENSG00000242902.1; RP11-309L24.2; OTTHUMG00000158366.1; FLNC-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -131.5772 non-coding 
CPAT coding probability 24.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FLNC-AS1:10 no no no no

Available literature

  1. Qian (2017), LncRNA expression profile of ΔNp63α in cervical squamous cancers and its suppressive effects on LIF expression., Cytokine
  2. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TNPO3-1:10
4.0 lnc-TNPO3-1:10
4.1 lnc-TNPO3-1:10
5.0 lnc-TNPO3-1:10
5.1 FLNC-AS1:5
5.2 FLNC-AS1:10