Transcript: FLNC-AS1:8

Basic information

LNCipedia transcript ID: FLNC-AS1:8 
LNCipedia gene ID: FLNC-AS1
Location (hg19): chr7:128502505-128520977
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1911 bp
Exons: 10
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000492679.1; KCP-007; OTTHUMT00000403050.1
Alternative gene names: ENSG00000135253.8; KCP; OTTHUMG00000158363.4; ENSG00000135253.9


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1740.6838 coding 
CPAT coding probability 99.97% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
FLNC-AS1:8 no no no no

Available literature

  1. Qian (2017), LncRNA expression profile of ΔNp63α in cervical squamous cancers and its suppressive effects on LIF expression., Cytokine
  2. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TNPO3-1:8
4.0 lnc-TNPO3-1:8
4.1 lnc-TNPO3-1:8
5.0 lnc-TNPO3-1:8
5.1 FLNC-AS1:3
5.2 FLNC-AS1:8