Transcript: FMR1-AS1:1

Basic information

LNCipedia transcript ID: FMR1-AS1:1 
LNCipedia gene ID: FMR1-AS1
Location (hg19): chrX:146990949-147003676
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2484 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011
Alternative transcript names: ENST00000433064
Alternative gene names: ENSG00000224191; FMR1-AS1; ASFMR1; FMR4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -101.3062 non-coding 
CPAT coding probability 60.69% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
FMR1-AS1:1 yes no no no

Available literature

  1. Khalil (2008), A novel RNA transcript with antiapoptotic function is silenced in fragile X syndrome., PLoS ONE
  2. Ladd (2007), An antisense transcript spanning the CGG repeat region of FMR1 is upregulated in premutation carriers but silenced in full mutation individuals., Hum. Mol. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IDS-2:1
3.1 lnc-IDS-4:1
4.0 FMR1-AS1:1
4.1 FMR1-AS1:1
5.0 FMR1-AS1:1
5.1 FMR1-AS1:1
5.2 FMR1-AS1:1