Transcript: FMR1-AS1:20

Basic information

LNCipedia transcript ID: FMR1-AS1:20 
LNCipedia gene ID: FMR1-AS1
Ensembl Gene ID: ENSG00000227083
Ensembl Transcript ID: ENST00000456072
Location (hg19): chrX:146981696-146982977
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 534 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017099; ENST00000456072.1; L29074.3-001; OTTHUMT00000058654.1; NONHSAT138905
Alternative gene names: XLOC_008252; linc-CXorf51-3; ENSG00000227083.1; L29074.3; OTTHUMG00000022605.1; ASFMR1; FMR4; L29074.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -145.0447 non-coding 
CPAT coding probability 1.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FMR1-AS1:20 no no no no

Available literature

  1. Khalil (2008), A novel RNA transcript with antiapoptotic function is silenced in fragile X syndrome., PLoS ONE
  2. Ladd (2007), An antisense transcript spanning the CGG repeat region of FMR1 is upregulated in premutation carriers but silenced in full mutation individuals., Hum. Mol. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IDS-3:1
3.1 lnc-IDS-5:1
4.0 lnc-IDS-5:1
4.1 FMR1-AS1:20
5.0 FMR1-AS1:20
5.1 FMR1-AS1:20
5.2 FMR1-AS1:20