Transcript: FMR1-AS1:4

Basic information

LNCipedia transcript ID: FMR1-AS1:4 
LNCipedia gene ID: FMR1-AS1
Location (hg19): chrX:146990949-147003676
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2644 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014
Alternative transcript names: NONHSAT138909; NR_024501
Alternative gene names: ASFMR1; FMR4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -101.3062 non-coding 
CPAT coding probability 60.48% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
FMR1-AS1:4 yes no no no

Available literature

  1. Khalil (2008), A novel RNA transcript with antiapoptotic function is silenced in fragile X syndrome., PLoS ONE
  2. Ladd (2007), An antisense transcript spanning the CGG repeat region of FMR1 is upregulated in premutation carriers but silenced in full mutation individuals., Hum. Mol. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-IDS-4:5
4.0 FMR1-AS1:4
4.1 FMR1-AS1:4
5.0 FMR1-AS1:4
5.1 FMR1-AS1:4
5.2 FMR1-AS1:4