Transcript: FMR1-AS1:8

Basic information

LNCipedia transcript ID: FMR1-AS1:8 
HGNC Gene Symbol: FMR1-AS1    
HGNC Full Gene Name: FMR1 antisense RNA 1
Ensembl Gene ID: ENSG00000268066
Ensembl Transcript ID: ENST00000601841
RefSeq ID: NR_024499
Location (hg19): chrX:146990949-146993335
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 2387 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT138906; ENST00000601841.1; NR_024499.3
Alternative gene names: ENSG00000268066.1; FMR1-AS1; ENSG00000268066.5; ASFMR1; FMR4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -101.3062 non-coding 
CPAT coding probability 1.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FMR1-AS1:8 no no no no

Available literature

  1. Khalil (2008), A novel RNA transcript with antiapoptotic function is silenced in fragile X syndrome., PLoS ONE
  2. Ladd (2007), An antisense transcript spanning the CGG repeat region of FMR1 is upregulated in premutation carriers but silenced in full mutation individuals., Hum. Mol. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-IDS-4:10
4.0 FMR1-AS1:8
4.1 FMR1-AS1:8
5.0 FMR1-AS1:8
5.1 FMR1-AS1:8
5.2 FMR1-AS1:8