Transcript: FOXC2-AS1:1

Basic information

LNCipedia transcript ID: FOXC2-AS1:1 
HGNC Gene Symbol: FOXC2-AS1    
HGNC Full Gene Name: FOXC2 antisense RNA 1
Ensembl Gene ID: ENSG00000260944
Ensembl Transcript ID: ENST00000563280
RefSeq ID: NR_125795
Location (hg19): chr16:86598751-86601367
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 319 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000563280.1; RP11-463O9.5-001; OTTHUMT00000432201.1; NONHSAT144226; NR_125795; NR_125795.1
Alternative gene names: ENSG00000260944.1; RP11-463O9.5; OTTHUMG00000176481.1; FOXC2-AS1; ODRUL


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 50.1675 non-coding 
CPAT coding probability 6.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
FOXC2-AS1:1 yes no no no

Available literature

  1. Zhu (2017), LncRNA ODRUL Contributes to Osteosarcoma Progression through the miR-3182/MMP2 Axis., Mol. Ther.
  2. Zhang (2016), A long non-coding RNA contributes to doxorubicin resistance of osteosarcoma., Tumour Biol.
  3. Zhu (2015), Long noncoding RNA expression profiles of the doxorubicin-resistant human osteosarcoma cell line MG63/DXR and its parental cell line MG63 as ascertained by microarray analysis., Int J Clin Exp Pathol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MTHFSD-1:1
4.0 FOXC2-AS1:1
4.1 FOXC2-AS1:1
5.0 FOXC2-AS1:1
5.1 FOXC2-AS1:1
5.2 FOXC2-AS1:1