Transcript: FOXD3-AS1:3

Basic information

LNCipedia transcript ID: FOXD3-AS1:3 
LNCipedia gene ID: FOXD3-AS1
RefSeq ID: NR_121636
Location (hg19): chr1:63786555-63789346
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 589 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_121636; NR_121636.1
Alternative gene names: pasFOXD3; FOXD3-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 17.7835 non-coding 
CPAT coding probability 33.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FOXD3-AS1:3 yes no no no

Available literature

  1. Zhang (2017), Long noncoding RNA FOXD3-AS1 regulates oxidative stress-induced apoptosis <i>via</i> sponging microRNA-150., FASEB J.
  2. Chen (2016), Down-regulation of long non-coding RNA FOXD3 antisense RNA 1 (FOXD3-AS1) inhibits cell proliferation, migration, and invasion in malignant glioma cells., Am J Transl Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ITGB3BP-1:7
4.0 FOXD3-AS1:3
4.1 FOXD3-AS1:3
5.0 FOXD3-AS1:3
5.1 FOXD3-AS1:3
5.2 FOXD3-AS1:3