Transcript: FOXD3-AS1:4

Basic information

LNCipedia transcript ID: FOXD3-AS1:4 
HGNC Gene Symbol: FOXD3-AS1    
HGNC Full Gene Name: FOXD3 antisense RNA 1
Ensembl Gene ID: ENSG00000230798
Ensembl Transcript ID: ENST00000431294
Location (hg19): chr1:63786555-63789253
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 496 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000431294.1; RP4-792G4.2-004; OTTHUMT00000025327.1; ENST00000431294.5
Alternative gene names: ENSG00000230798.1; RP4-792G4.2; OTTHUMG00000009138.1; ENSG00000230798.5; FOXD3-AS1; pasFOXD3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -250.462 non-coding 
CPAT coding probability 33.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FOXD3-AS1:4 yes no no no

Available literature

  1. Zhang (2017), Long noncoding RNA FOXD3-AS1 regulates oxidative stress-induced apoptosis <i>via</i> sponging microRNA-150., FASEB J.
  2. Chen (2016), Down-regulation of long non-coding RNA FOXD3 antisense RNA 1 (FOXD3-AS1) inhibits cell proliferation, migration, and invasion in malignant glioma cells., Am J Transl Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ITGB3BP-1:2
4.0 FOXD3-AS1:4
4.1 FOXD3-AS1:4
5.0 FOXD3-AS1:4
5.1 FOXD3-AS1:4
5.2 FOXD3-AS1:4