Transcript: FOXG1-AS1:1

Basic information

LNCipedia transcript ID: FOXG1-AS1:1 
LNCipedia gene ID: FOXG1-AS1
RefSeq ID: NR_125758
Location (hg19): chr14:29194448-29234525
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 905 bp
Exons: 7
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_125758; NR_125758.1
Alternative gene names: FOXG1-AS; FOXG1-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -5.0935 non-coding 
CPAT coding probability 1.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FOXG1-AS1:1 yes no no no

Available literature

  1. Peffers (2015), Transcriptome analysis of ageing in uninjured human Achilles tendon., Arthritis Res. Ther.
  2. Velmeshev (2013), Expression of non-protein-coding antisense RNAs in genomic regions related to autism spectrum disorders., Mol Autism


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PRKD1-8:4
4.0 FOXG1-AS1:1
4.1 FOXG1-AS1:1
5.0 FOXG1-AS1:1
5.1 FOXG1-AS1:1
5.2 FOXG1-AS1:1