Transcript: FOXG1-AS1:12

Basic information

LNCipedia transcript ID: FOXG1-AS1:12 
LNCipedia gene ID: FOXG1-AS1
Location (hg19): chr14:29198289-29234476
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 595 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000257126.1|ENST00000551395.1
Alternative gene names: FOXG1-AS


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -180.0994 non-coding 
CPAT coding probability 0.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FOXG1-AS1:12 yes no no no

Available literature

  1. Peffers (2015), Transcriptome analysis of ageing in uninjured human Achilles tendon., Arthritis Res. Ther.
  2. Velmeshev (2013), Expression of non-protein-coding antisense RNAs in genomic regions related to autism spectrum disorders., Mol Autism


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 FOXG1-AS1:12
5.0 FOXG1-AS1:12
5.1 FOXG1-AS1:12
5.2 FOXG1-AS1:12