Transcript: FOXN3-AS2:1

Basic information

LNCipedia transcript ID: FOXN3-AS2:1 
HGNC Gene Symbol: FOXN3-AS2    
HGNC Full Gene Name: FOXN3 antisense RNA 2
Ensembl Gene ID: ENSG00000259073
Ensembl Transcript ID: ENST00000554071
RefSeq ID: NR_024620
Location (hg19): chr14:90042560-90043821
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1262 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000554071.1; CTD-2303B20.1-001; OTTHUMT00000411018.1; NONHSAT039190; NR_024620.1
Alternative gene names: ENSG00000259073.1; CTD-2303B20.1; OTTHUMG00000170974.1; FOXN3-AS2; PRO1768


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -64.1693 non-coding 
CPAT coding probability 2.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FOXN3-AS2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-33N16.1.1-4:1
4.0 FOXN3-AS2:1
4.1 FOXN3-AS2:1
5.0 FOXN3-AS2:1
5.1 FOXN3-AS2:1
5.2 FOXN3-AS2:1