Transcript: FRGCA:4

Basic information

LNCipedia transcript ID: FRGCA:4 
LNCipedia gene ID: FRGCA
Location (hg19): chr21:44561253-44561760
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 508 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000236663.1|HBMT00000927664.1
Alternative gene names: LncRNA-AP001631.9


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -70.2625 non-coding 
CPAT coding probability 13.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FRGCA:4 no no no no

Available literature

  1. Cai (2015), LncRNA-AP001631.9 promotes cell migration in gastric cancer., Int J Clin Exp Pathol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 FRGCA:4
5.0 FRGCA:4
5.1 FRGCA:4
5.2 FRGCA:4