Transcript: FZD10-DT:53

Basic information

LNCipedia transcript ID: FZD10-DT:53 
HGNC Gene Symbol: FZD10-DT    
HGNC Full Gene Name: FZD10 divergent transcript
Ensembl Gene ID: ENSG00000250208
Ensembl Transcript ID: ENST00000509760
RefSeq ID: NR_033834
Location (hg19): chr12:130636138-130646223
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 3678 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000509760; TCONS_00020180; ENST00000509760.1; RP11-143E21.7-002; OTTHUMT00000399505.1; NONHSAT031958; NR_033834; NR_033834.1
Alternative gene names: ENSG00000250208; XLOC_010263; linc-TMEM132D-1; RP11-143E21.7; ENSG00000250208.2; OTTHUMG00000168379.1; FZD10-AS1; ENSG00000250208.6; FLJ31485


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 12.2087 non-coding 
CPAT coding probability 15.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FZD10-DT:53 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RIMBP2-4:10
3.1 lnc-TMEM132D-3:10
4.0 FZD10-AS1:13
4.1 FZD10-AS1:13
5.0 FZD10-AS1:13
5.1 FZD10-DT:26
5.2 FZD10-DT:53