Transcript: G2E3-AS1:15

Basic information

LNCipedia transcript ID: G2E3-AS1:15 
LNCipedia gene ID: G2E3-AS1
Location (hg19): chr14:30938438-30941713
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 251 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00022698; NONHSAT036229
Alternative gene names: XLOC_010988; linc-PRKD1-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -166.2013 non-coding 
CPAT coding probability 0.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
G2E3-AS1:15 no no no no

Available literature

  1. Dudek (2017), Identification of long non-coding RNAs that stimulate cell survival in bladder cancer., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PRKD1-2:2
3.1 lnc-PRKD1-2:6
4.0 lnc-PRKD1-2:6
4.1 lnc-PRKD1-2:6
5.0 lnc-PRKD1-2:6
5.1 G2E3-AS1:8
5.2 G2E3-AS1:15