Transcript: GABPB1-AS1:3

Basic information

LNCipedia transcript ID: GABPB1-AS1:3 
LNCipedia gene ID: GABPB1-AS1
Location (hg19): chr15:50647039-50655838
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3113 bp
Exons: 2
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA431:2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -23.2858 non-coding 
CPAT coding probability 12.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GABPB1-AS1:3 yes no no no

Available literature

  1. Chakravarty (2014), The oestrogen receptor alpha-regulated lncRNA NEAT1 is a critical modulator of prostate cancer., Nat Commun
  2. Tani (2014), Long non-coding RNAs as surrogate indicators for chemical stress responses in human-induced pluripotent stem cells., PLoS ONE
  3. Tani (2013), Identification of short-lived long non-coding RNAs as surrogate indicators for chemical stress response., Biochem. Biophys. Res. Commun.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 GABPB1-AS1:3
4.1 GABPB1-AS1:3
5.0 GABPB1-AS1:3
5.1 GABPB1-AS1:3
5.2 GABPB1-AS1:3