Transcript: GABPB1-AS1:4

Basic information

LNCipedia transcript ID: GABPB1-AS1:4 
LNCipedia gene ID: GABPB1-AS1
Location (hg19): chr15:50647156-50648634
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1479 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000560187.1; CTD-3110H11.2-004; OTTHUMT00000418304.1; NONHSAT042407
Alternative gene names: ENSG00000244879.2; CTD-3110H11.2; OTTHUMG00000172396.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -164.3088 non-coding 
CPAT coding probability 13.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GABPB1-AS1:4 yes no no no

Available literature

  1. Chakravarty (2014), The oestrogen receptor alpha-regulated lncRNA NEAT1 is a critical modulator of prostate cancer., Nat Commun
  2. Tani (2014), Long non-coding RNAs as surrogate indicators for chemical stress responses in human-induced pluripotent stem cells., PLoS ONE
  3. Tani (2013), Identification of short-lived long non-coding RNAs as surrogate indicators for chemical stress response., Biochem. Biophys. Res. Commun.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-USP8-2:1
4.0 GABPB1-AS1:4
4.1 GABPB1-AS1:4
5.0 GABPB1-AS1:4
5.1 GABPB1-AS1:4
5.2 GABPB1-AS1:4