Transcript: GABPB1-IT1:8

Basic information

LNCipedia transcript ID: GABPB1-IT1:8 
LNCipedia gene ID: GABPB1-IT1
Location (hg19): chr15:50641135-50647076
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 5942 bp
Exons: 1
Sources: NONCODE v4; Refseq - Dec 2014
Alternative transcript names: NONHSAT042404; NR_026891
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -23.6376 non-coding 
CPAT coding probability 19.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GABPB1-IT1:8 yes no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HDC-2:2
4.0 lnc-HDC-2:2
4.1 lnc-HDC-2:2
5.0 lnc-HDC-2:2
5.1 GABPB1-IT1:3
5.2 GABPB1-IT1:8