Transcript: GACAT2:2

Basic information

LNCipedia transcript ID: GACAT2:2 
LNCipedia gene ID: GACAT2
Location (hg19): chr18:8695855-8696125
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 271 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT057183
Alternative gene names: HMlincRNA717


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -107.4908 non-coding 
CPAT coding probability 0.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GACAT2:2 no no no no

Available literature

  1. Chen (2014), Long noncoding RNA HMlincRNA717 and AC130710 have been officially named as gastric cancer associated transcript 2 (GACAT2) and GACAT3, respectively., Tumour Biol.
  2. Li (2014), Non-coding RNAs and gastric cancer., World J. Gastroenterol.
  3. Shao (2014), Low expression of lncRNA-HMlincRNA717 in human gastric cancer and its clinical significances., Tumour Biol.
  4. Song (2013), Long non-coding RNA expression profile in human gastric cancer and its clinical significances., J Transl Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PPP4R1-7:2
4.0 GACAT2:2
4.1 GACAT2:2
5.0 GACAT2:2
5.1 GACAT2:2
5.2 GACAT2:2