Transcript: GACAT2:3

Basic information

LNCipedia transcript ID: GACAT2:3 
LNCipedia gene ID: GACAT2
Location (hg19): chr18:8695854-8707644
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 843 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000265962.1|ENST00000579368.1
Alternative gene names: HMlincRNA717


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -107.4908 non-coding 
CPAT coding probability 17.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GACAT2:3 yes no no no

Available literature

  1. Chen (2014), Long noncoding RNA HMlincRNA717 and AC130710 have been officially named as gastric cancer associated transcript 2 (GACAT2) and GACAT3, respectively., Tumour Biol.
  2. Li (2014), Non-coding RNAs and gastric cancer., World J. Gastroenterol.
  3. Shao (2014), Low expression of lncRNA-HMlincRNA717 in human gastric cancer and its clinical significances., Tumour Biol.
  4. Song (2013), Long non-coding RNA expression profile in human gastric cancer and its clinical significances., J Transl Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 GACAT2:3
5.0 GACAT2:3
5.1 GACAT2:3
5.2 GACAT2:3