Transcript: GAPLINC:3

Basic information

LNCipedia transcript ID: GAPLINC:3 
LNCipedia gene ID: GAPLINC
RefSeq ID: NR_110428
Location (hg19): chr18:3466248-3478976
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 475 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_110428; NR_110428.1
Alternative gene names: TCONS_00026238; GAPLINC


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -89.6785 non-coding 
CPAT coding probability 1.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GAPLINC:3 no no no no

Available literature

  1. Liu (2016), Hypoxia Promotes Gastric Cancer Malignancy Partly through the HIF-1α Dependent Transcriptional Activation of the Long Non-coding RNA GAPLINC., Front Physiol
  2. Wu (2016), Long Non-Coding RNA ucoo2kmd.1 Regulates CD44-Dependent Cell Growth by Competing for miR-211-3p in Colorectal Cancer., PLoS ONE
  3. Huang (2015), Long non-coding RNA TUG1 is up-regulated in hepatocellular carcinoma and promotes cell growth and apoptosis by epigenetically silencing of KLF2., Mol. Cancer
  4. Xie (2015), Decreased long noncoding RNA SPRY4-IT1 contributing to gastric cancer cell metastasis partly via affecting epithelial-mesenchymal transition., J Transl Med
  5. Xie (2015), Long noncoding RNA HOXA-AS2 promotes gastric cancer proliferation by epigenetically silencing P21/PLK3/DDIT3 expression., Oncotarget
  6. Hu (2014), Long noncoding RNA GAPLINC regulates CD44-dependent cell invasiveness and associates with poor prognosis of gastric cancer., Cancer Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TGIF1-1:9
4.0 GAPLINC:3
4.1 GAPLINC:3
5.0 GAPLINC:3
5.1 GAPLINC:3
5.2 GAPLINC:3