Transcript: GAS1RR:7

Basic information

LNCipedia transcript ID: GAS1RR:7 
LNCipedia gene ID: GAS1RR
Location (hg19): chr9:89563620-89611321
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 859 bp
Exons: 5
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00016044; NONHSAT132845
Alternative gene names: XLOC_007438; linc-C9orf170-1; LncRNA-Hh


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -90.1256 non-coding 
CPAT coding probability 2.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GAS1RR:7 no no no no

Available literature

  1. Zhou (2016), LncRNA-Hh Strengthen Cancer Stem Cells Generation in Twist-Positive Breast Cancer via Activation of Hedgehog Signaling Pathway., Stem Cells


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C9orf170-1:6
3.1 lnc-C9orf170-1:6
4.0 GAS1RR:7
4.1 GAS1RR:7
5.0 GAS1RR:7
5.1 GAS1RR:7
5.2 GAS1RR:7