Transcript: GAS6-DT:18

Basic information

LNCipedia transcript ID: GAS6-DT:18 
LNCipedia gene ID: GAS6-DT
RefSeq ID: NR_044993
Location (hg19): chr13:114567150-114569805
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1942 bp
Exons: 2
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT035385; NR_044993; NR_044993.1
Alternative gene names: FLJ44054; GAS6-AS2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -8.1002 non-coding 
CPAT coding probability 18.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GAS6-DT:18 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM70B-2:5
4.0 GAS6-AS2:2
4.1 GAS6-AS2:2
5.0 GAS6-AS2:2
5.1 GAS6-DT:8
5.2 GAS6-DT:18