Transcript: GASAL1:22

Basic information

LNCipedia transcript ID: GASAL1:22 
LNCipedia gene ID: GASAL1
Location (hg19): chr8:103819050-103822199
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2769 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000405813; ENST00000405813.2; KB-1732A1.1-201
Alternative gene names: ENSG00000253669; KB-1732A1.1; ENSG00000253669.2; OTTHUMG00000164736.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.0637 non-coding 
CPAT coding probability 75.90% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
GASAL1:22 no no no no

Available literature

  1. Gasri-Plotnitsky (2017), A novel lncRNA, GASL1, inhibits cell proliferation and restricts E2F1 activity., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KB-1507C5.2.1-3:3
3.1 lnc-KB-1507C5.2.1-3:2
4.0 lnc-KB-1507C5.2.1-3:2
4.1 lnc-KB-1507C5.2.1-3:2
5.0 lnc-KB-1507C5.2.1-3:2
5.1 GASAL1:7
5.2 GASAL1:22