Transcript: GASAL1:30

Basic information

LNCipedia transcript ID: GASAL1:30 
LNCipedia gene ID: GASAL1
Location (hg19): chr8:103820977-103821967
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 857 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00015332; NONHSAT147655
Alternative gene names: XLOC_006894; linc-ATP6V1C1-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -29.3978 non-coding 
CPAT coding probability 1.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GASAL1:30 no no no no

Available literature

  1. Gasri-Plotnitsky (2017), A novel lncRNA, GASL1, inhibits cell proliferation and restricts E2F1 activity., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KB-1507C5.2.1-3:5
3.1 lnc-KB-1507C5.2.1-3:5
4.0 lnc-KB-1507C5.2.1-3:5
4.1 lnc-KB-1507C5.2.1-3:5
5.0 lnc-KB-1507C5.2.1-3:5
5.1 GASAL1:15
5.2 GASAL1:30