Transcript: GATA3-AS1:12

Basic information

LNCipedia transcript ID: GATA3-AS1:12 
LNCipedia gene ID: GATA3-AS1
Location (hg19): chr10:8092415-8093844
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 688 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT011309
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 32.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GATA3-AS1:12 yes no no no

Available literature

  1. Spurlock (2015), Expression and functions of long noncoding RNAs during human T helper cell differentiation., Nat Commun
  2. Qin (2014), Expression pattern of long non-coding RNAs in renal cell carcinoma revealed by microarray., PLoS ONE
  3. Zhang (2013), Profiling of human CD4+ T-cell subsets identifies the TH2-specific noncoding RNA GATA3-AS1., J. Allergy Clin. Immunol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KIN-2:11
4.0 GATA3-AS1:12
4.1 GATA3-AS1:12
5.0 GATA3-AS1:12
5.1 GATA3-AS1:12
5.2 GATA3-AS1:12