Transcript: GATA6-AS1:1
Basic information
LNCipedia transcript ID: GATA6-AS1:1
HGNC Gene Symbol: GATA6-AS1
HGNC Full Gene Name:
GATA6 antisense RNA 1 (head to head)
Ensembl Gene ID:
ENSG00000266010
Ensembl Transcript ID:
ENST00000583490
RefSeq ID:
NR_102763
Location (hg19): chr18:19746859-19748929
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1788 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000501730; ENST00000583490.1; RP11-627G18.3-001; OTTHUMT00000446373.1; NONHSAT058607; NR_102763; NR_102763.1
Alternative gene names: ENSG00000245382; AC091588.1; ENSG00000266010.1; RP11-627G18.3; OTTHUMG00000179440.1; GATA6-AS1; locus5689; BM742401
RNA sequence:
Structure:
Protein coding potential
In stringent set: yes
Locus conservation
| Locus conservation? |  |
 |
 |
 |
|---|---|---|---|---|
| GATA6-AS1:1 | no | no | no | no |
Available literature
- Wang (2016), Epigenetic silencing of tumor suppressor long non-coding RNA BM742401 in chronic lymphocytic leukemia., Oncotarget
- Park (2013), A known expressed sequence tag, BM742401, is a potent lincRNA inhibiting cancer metastasis., Exp. Mol. Med.
- Sigova (2013), Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cells., Proc. Natl. Acad. Sci. U.S.A.
LNCipedia transcript ID history
| LNCipedia version | LNCipedia transcript ID |
|---|---|
| 1.3 | lnc-RP11-863N1.2.1-2:1 |
| 3.1 | lnc-RP11-863N1.2.1-4:1 |
| 4.0 | GATA6-AS1:1 |
| 4.1 | GATA6-AS1:1 |
| 5.0 | GATA6-AS1:1 |
| 5.1 | GATA6-AS1:1 |
| 5.2 | GATA6-AS1:1 |