Transcript: GATA6-AS1:28

Basic information

LNCipedia transcript ID: GATA6-AS1:28 
LNCipedia gene ID: GATA6-AS1
Location (hg19): chr18:19742601-19745675
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3075 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT058605
Alternative gene names: locus5689; BM742401


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -88.2591 non-coding 
CPAT coding probability 2.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GATA6-AS1:28 no no no no

Available literature

  1. Wang (2016), Epigenetic silencing of tumor suppressor long non-coding RNA BM742401 in chronic lymphocytic leukemia., Oncotarget
  2. Park (2013), A known expressed sequence tag, BM742401, is a potent lincRNA inhibiting cancer metastasis., Exp. Mol. Med.
  3. Sigova (2013), Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cells., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-863N1.2.1-5:2
4.0 lnc-RP11-863N1.2.1-5:2
4.1 GATA6-AS1:28
5.0 GATA6-AS1:28
5.1 GATA6-AS1:28
5.2 GATA6-AS1:28