Transcript: GCC2-AS1:1

Basic information

LNCipedia transcript ID: GCC2-AS1:1 
HGNC Gene Symbol: GCC2-AS1    
HGNC Full Gene Name: GCC2 antisense RNA 1
Ensembl Gene ID: ENSG00000214184
Ensembl Transcript ID: ENST00000322353
Location (hg19): chr2:109123971-109150652
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 558 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000322353.3; AC012487.2-001; OTTHUMT00000330227.1; NONHSAT073104
Alternative gene names: ENSG00000214184.3; AC012487.2; OTTHUMG00000153224.1; GCC2-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -118.3052 non-coding 
CPAT coding probability 4.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GCC2-AS1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EDAR-4:1
4.0 GCC2-AS1:1
4.1 GCC2-AS1:1
5.0 GCC2-AS1:1
5.1 GCC2-AS1:1
5.2 GCC2-AS1:1