Transcript: GCC2-AS1:2

Basic information

LNCipedia transcript ID: GCC2-AS1:2 
HGNC Gene Symbol: GCC2-AS1    
HGNC Full Gene Name: GCC2 antisense RNA 1
Ensembl Gene ID: ENSG00000214184
Ensembl Transcript ID: ENST00000440975
Location (hg19): chr2:109128145-109150638
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 574 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000440975.1; AC012487.2-002; OTTHUMT00000330228.1; NONHSAT073105
Alternative gene names: ENSG00000214184.3; AC012487.2; OTTHUMG00000153224.1; GCC2-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -76.2192 non-coding 
CPAT coding probability 0.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GCC2-AS1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EDAR-4:2
4.0 GCC2-AS1:2
4.1 GCC2-AS1:2
5.0 GCC2-AS1:2
5.1 GCC2-AS1:2
5.2 GCC2-AS1:2